Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs11123778 chr2:99887221 T/C 9.2E-7 513 7 20.77 22.27 KM Plot
HNSC rs111520475 chr3:100960642 T/G 2.03E-6 498 22.1 20.53 5.7 KM Plot
HNSC rs11191265 chr10:104102118 G/A 9.76E-6 503 21.77 23.42 9.47 KM Plot
HNSC rs11194907 chr10:111663943 A/G 2.13E-5 515 27.92 21.73 15.73 KM Plot
HNSC rs11231748 chr11:64094075 G/A 4.72E-5 513 21.47 25.3 7.12 KM Plot
HNSC rs11239952 chr1:146715204 A/G 1.27E-5 514 6.1 20.37 22.02 KM Plot
HNSC rs11247891 chr1:26591498 T/C 1.75E-5 515 6.8 20.58 22.1 KM Plot
HNSC rs11252756 chr10:538811 A/T 1.79E-6 515 23.17 18.08 11.98 KM Plot
HNSC rs114122046 chr19:2410950 A/T 1.6E-14 506 22.15 21.37 2.55 KM Plot
HNSC rs11440344 chr21:48062251 T/TG 4.04E-9 514 21.52 21.5 2.73 KM Plot
HNSC rs11457798 chr3:161104641 C/CT 8.32E-6 503 24 25.4 17.33 KM Plot
HNSC rs114593694 chr1:35801535 A/G 1.02E-13 510 21.27 31.13 3.02 KM Plot
HNSC rs114705982 chr1:36232075 T/C 6.81E-14 510 21.23 32.67 3.02 KM Plot
HNSC rs115087102 chr1:36258854 G/A 1.34E-13 508 21.23 29.17 3.02 KM Plot
HNSC rs115237737 chr16:11845822 C/T 1.65E-6 501 21.42 24.23 3.17 KM Plot